firehoseTCGA - -- &#; TCGA，，，__。. . firehoseTCGA - TCGA - TCGA - firehose_get TCGAbroad | TCGA-•
GDAC Firehose TCGA __bilibili-- &#; TCGA，，TCGA，TCGA-，TCGA，
Broad GDAC Firehose—TCGA - -- &#; TCGA docker TCGA？ TCGAR ，TCGA，
Broad GDAC Firehose-- &#; Please note that downloading primary data and analysis results from our Broad Institute GDAC Firehose constitutes an acknowledgement that you and collaborators will
TCGA--firehose - -- &#; TCGA--firehose. ucsc xena ，，？.
Broad GDAC:TCGA_ -- &#; ””! Broad GDACTCGA，，. Cases ， Data
Broad GDAC:TCGA - --- &#; Broad GDAC, TCGA ，，。：
Breast Invasive Carcinoma (TCGA, Firehose Legacy)Description. TCGA Breast Invasive Carcinoma. Source data from GDAC Firehose. Previously known as TCGA Provisional. This dataset contains summary data
Documentation - Broad TCGA GDAC - Confluence-- &#; In August of we greatly expanded the set of clinical data offered by FireBrowse, so that it reflects the entire range of - CDEs collected by TCGA
Breast Invasive Carcinoma (TCGA, Firehose Legacy)Description. TCGA Breast Invasive Carcinoma. Source data from GDAC Firehose. Previously known as TCGA Provisional. This dataset contains summary data visualizations and clinical data from a broad sampling of , carcinomas from , patients. The data was gathered as part of the Broad Institute of MIT and Harvard Firehose initiative, a
| webTCGA（ -- &#; ：（Broad GDAC Firehose, CancerD, cbioportal, CELLX, IntOGen, TANRIC, TCGA Clinical Explorer,TCGAU, UCSC Xena Vanno）。 ，cbioportal，，。
TCGA（）_wendy_ya -- &#; TCGA Stats 。。，：mRNA
Broad TCGA GDAC - ConfluencePlease visit gdac.broadinstitue.org for the Broad GDAC Firehose home page. Born of the desire to systematize analyses from The Cancer Genome Atlas pilot and scale their execution to the dozens of remaining diseases to be studied, Firehose now sits atop ~ terabytes of TCGA data and reliably executes more than pipelines per month.
AWG Runs - Broad TCGA GDAC - Confluence-- &#; AWG Runs. The Broad Institute GDAC will gladly coordinate with TCGA analysis working groups (AWGs) to provide custom Firehose runs tailored to their specific needs. This represents an evolution of Firehose, beyond its original mission of monthly runs intended for archival storage at the DCC and wide public consumption beyond TCGA, by
Pan-cancer analysis identifies BIRC as a prognostic -- &#; TCGA BIRC RNA sequencing data from different cancer types and matching normal tissue samples for cancer types were downloaded from Broad GDAC Firehose and validated using breast cancer microarray data from our previous work and data sets from the GENT web-based tool. Survival data were analyzed with multivariable
windowsRTCGAToolboxTCGA -- &#; 。 ，。，。，~~
Biomedicines | Free Full-Text | Evaluation and Comparison -- &#; The TCGA methylation data were downloaded from Broad GDAC Firehose (https://gdac.broadinstitute.org, accessed on July ), while the RNA-seq data were retrieved using the R package RTCGAToolbox Samur, M.K. RTCGAToolbox: A New Tool for Exporting TCGA Firehose Data. PLoS ONE , , e. [Google Scholar]
Aggregate Analysis Features - Thyroid Adenocarcinoma -- &#; In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal. Analysis Results (MD checksum) Auxiliary Data (MD checksum) MAGE-TAB File (MD checksum)
linuxTCGA,TCGA_weixin -- &#; Firehose ，。，Broad Institute's GDAC Firehose，TCGA。
Firehose | www.broadinstitute.org/cancer/CGA &#; Although still evolving, Firehose has become a valuable piece of The Broad Institute computing infrastructure; it is used daily by dozens in the Cancer Genome Analysis group, to perform all TCGA GDAC and GSC analyses, managing hundreds of thousands of jobs on tens of thousands of samples, spread over hundreds of compute nodes and a + TB
GitHub - dpmerrell/tcga-pipeline: Downloads TCGA data Downloads TCGA data from the Broad Institute's GDAC Firehose pipeline and stores it in convenient HDF files. The downloaded, unzipped, and partially processed data will take a footprint of GB on disk. (In contrast, the final HDF files take <GB unzipped.) downloading data from the BROAD TCGA GDAC site constitutes agreement to the
TCGA GDAC Firehose clinical parameters map - Broad -- &#; This is an interactive heatmap of the current set of TCGA clinical data elements (CDEs) picked by Firehose for correlative analyses, broken down by disease cohort. Hovering over a cell will show the status of the given CDE for that disease cohort. The GREEN/RED colors respectively mean that the given CDE was/wasn't available for
| TCGA？-- &#; （HiseqHiseq，GAGA），！. ，：. 、GDC Data Portal ；. 、GDC Legacy Archive ，；. 、 GDC
TCGA--level level_weixin_ -- &#; TCGA，Broad GDAC Firehose, Oncomine, TCGAbiolinks，TCGA-Assembler, TCGASTAT，RTCGAToolbox，TCGA，。
， - -- &#; ，. ，TCGA （https://portal.gdc.cancer.gov/）。. ，。.
Pan-cancer analysis identifies BIRC as a prognostic -- &#; TCGA BIRC RNA sequencing data from different cancer types and matching normal tissue samples for cancer types were downloaded from Broad GDAC Firehose and validated using breast cancer microarray data from our previous work and data sets from the GENT web-based tool. Survival data were analyzed with multivariable
Biomedicines | Free Full-Text | Evaluation and Comparison -- &#; The TCGA methylation data were downloaded from Broad GDAC Firehose (https://gdac.broadinstitute.org, accessed on July ), while the RNA-seq data were retrieved using the R package RTCGAToolbox Samur, M.K. RTCGAToolbox: A New Tool for Exporting TCGA Firehose Data. PLoS ONE , , e. [Google Scholar]
Aggregate Analysis Features - Thyroid Adenocarcinoma -- &#; In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal. Analysis Results (MD checksum) Auxiliary Data (MD checksum) MAGE-TAB File (MD checksum)